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GVL Publications

​​​2024

Campbell MA, Hammer MP, Adams MB and Unmack PJ. 2024. Evolutionary relationships and fine-scale geographic

structuring in the temperate percichthyid genus Gadopsis (blackfishes) to support fisheries and conservation management. Molecular Phylogenetics and Evolution. 199, 108159. https://doi.org/10.1016/j.ympev.2024.108159​

Habibi E, Miller MR, Schreier AD, Campbell MA, Hung T-C, Gille DA, Baerwald MR and Finger AJ. Single ​

generation epigenetic change in captivity and reinforcement in subsequent generations in a delta smelt (Hypomesus transpacificus) conservation hatchery. Molecular Ecology. 00. e17449. https://doi.org/10.1111/mec.17449

Holmes, A. E., M. R. Baerwald, J. Rodzen, B. M. Schreier, B. Mahardja, and A. J. Finger. (2024) Evaluating environmental

DNA detection of a rare fish in turbid water using field and experimental approaches. PeerJ 12:e16453 DOI 10.7717/peerj.16453. (url)

Nagarajan, R. P., L. Sanders, N. Kolm, A. Perez, T. Senegal, B. Mahardja, M. R. Baerwald, and A. D. Schreier (2024) CRISPR

based environmental DNA detection for a rare endangered estuarine species. Environmental DNA, online early (url)

Rogers et al. 2024. Genomic and common garden data reveal significant genetic differentiation in an endangered plant

species, San Fernando Valley spineflower Chorizanthe parryi var. fernandina. Conservation Genetics. https://doi.org/10.1007/s10592-024-01610-0

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2023

Auringer, G., M. A. Campbell, P. A. L. Goertler, and A. J. Finger (2023) Lampreys in California (Lampetra spp. and 

Entosphenus spp.): Mitochondrial phylogenetic analysis reveals previously unrecognized lamprey diversity. North American Journal of Fisheries Management 43(6):1511-1530. (url)​

Nagarajan, R. P., A. Holmes, and A. Schreier (2023) Reference sequence database for eDNA metabarcoding of San Francisco

estuary fishes and invertebrates [Dataset]. Dryad. https://doi.org/10.5061/dryad.0p2ngf25z​

Stagg, J., Goodman, A., Mitchell, L., Funk, E., and Schreier, A. (2023) Proofing field and laboratory species identification

procedures developed for the non-native Osmerid species wakasagi (Hyposmesus nipponensis) using SHERLOCK-based genetic verification. San Francisco Estuary and Watershed Sciences 21(4):2. (url)​

LaCava, M. E. F., Griffiths, J. S., Ellison, L., Carson, E. W., Hung, T-C., and Finger A. J. (2023) Loss of plasticity in maturation

timing after ten years of captive spawning in a delta smelt conservation hatchery. Evolutionary Applications. (url)​

LaCava, M. E. F., Donohue, I. M., Badger, M. E., Hung T-C., Ellison, L., Rahman, M. M., Kelvas, K., Finger, A. J., and Carson, E.

W. (2023) Assessing captive spawning strategies for supplementation production of Delta Smelt (Hypomesus transpacificus). Transactions of the American Fisheries Society (url).​

Baerwald, M. R., Funk, E. C., Goodbla, A. M., Campbell, M. A., Thompson, T., Meek, M. H., & Schreier, A. D. (2023). Rapid

CRISPR‐Cas13a genetic identification enables new opportunities for listed Chinook salmon management. Molecular Ecology Resources. (url)​

Campbell M.A., Hale M.C., Jalbert C.S., Dunker K., Sepulveda A.J., López J.A., Falke J.A. and Westley PAH. 2023. Genomics

reveals the origins and current structure of a genetically depauperate freshwater species in its introduced Alaskan range. Evolutionary Applications. 16, 1119-1134. (url)

Campbell MA. (2023, February 7). DNA unveils new freshwater fish species in California. California WaterBlog.

https://californiawaterblog.com/2023/01/29/dna-unveils-new-freshwater-fish-species-in-california

Nagarajan, R. P., A. Holmes, and A. Schreier (2023) Reference sequence database for eDNA metabarcoding of San Francisco

estuary fishes and invertebrates [Dataset]. Dryad. https://doi.org/10.5061/dryad.0p2ngf25zll​​​

Campbell M.A., Badger M.E., Starotska A.B., Hawks T. and Finger A.J. 2023. Molecular phylogenetic and population

genetic relationships of a putative species of sucker (Catostomus sp.) from Surprise Valley in the Great Basin, USA. Transactions of the American Fisheries Society. 152, 273– 286. (url) Featured Paper ​

Campbell M.A., Habibi E., Auringer G., Stephens M., Conway K., Rodzen, J., Conway K.W., and Finger A.J. Molecular

systematics of Redband Trout from Genome-Wide DNA Sequencing substantiates the description of a new taxon (Salmonidae: Oncorhynchus mykiss calisulat) from the McCloud River. Zootaxa. 5254 (1):001-029. (url) ​

White, S. L., D. A. Fox, T. Beridze, S. K. Bolden, R. L. Johnson, T. F. Savoy, F. Scheele, A. D. Schreier, and D. C. Kazyak. 2023.

Expanding captive culture industry threatens decades of global sturgeon conservation. Fisheries 48(2):54-61. (url)​

Blair, S. R. K., A. Schreier, M. Escalona, A. Finger, S. Joslin, R. Sahasradbudhe, M. Marimuthu, O. Nguyen, N. Chumchim, E. R.

Morris, H. Mangelson, and J. Hull. 2023. A draft reference genome of the Vernal Pool Fairy Shrimp, Branchinecta lynchi.

Journal of Heredity 114(1):81-87. (url)​

Blair, S. R. K., A. Schreier, M. Escalona, A. Finger, S. Joslin, R. Sahasradbudhe, M. Marimuthu, O. Nguyen, N. Chumchim, E. R.

Morris, H. Mangelson, and J. Hull. 2023. A chromosome-level reference genome for the Versatile Fairy Shrimp. Branchinecta lindahli. Journal of Heredity 114(1):74-80. (url)

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2022

Willis, S. C., B. Parker, A. D. Schreier, R. Beamesderfer, D. Miller, S. Young, and S. R. Narum. 2022. Population structure of

White Sturgeon (Acipenser transmontanus) in the Columbia River inferred from single-nucleotide polymorphisms. Diversity 14(12):1045. (url)

Blair, S. R. K., J. Hull, M. Escalona, A. Finger, S. Joslin, R. Sahasradbudhe, M. P. A. Marimuthu, O. Nguyen, N. Chumchim, E. R.

Morris, S. Velazquez, and A. Schreier. 2022. The reference genome of the Vernal Pool Tadpole Shrimp, Lepidurus packardi.

Journal of Heredity 113(6):706-711. (url)​

Su Y, Moyle PB, Campbell MA, Finger AJ, O’Rourke S, Baumsteiger J, and Miller MR. 2022. Population genomic analysis of

the speckled dace species complex (Rhinichthys osculus) identifies three species-level lineages. Transactions of the American Fisheries Society. 151:695–710 https://doi.org/10.1002/tafs.10388. Featured Paper and ‘Most Downloaded’ paper in first year.​

Moyle PB and Campbell MA. 2022. Cryptic Species of Freshwater Sculpin (Cottidae: Cottus) in California. Zootaxa. 5154: 501-

527. https://doi.org/10.11646/zootaxa.5154.5.1

Campbell MA, Joslin SEK, Goodbla AM, Willmes M, Hobbs JA, Lewis LS and Finger AJ. 2022. Polygenic discrimination of 

migratory phenotypes in an estuarine forage fish. G3. jkac133. https://doi.org/10.1093/g3journal/jkac133

Nagarajan, R., M. Bedwell, A. Holmes, T. Sanches, S. Acuña, M. Baerwald, M. Barnes, S. Blankenship, R. E. Connon,

K. Deiner, D. Gille, C. S. Goldberg, M. E. Hunter, C. L. Jerde, G. Luikart, R. S. Meyer, A. Watts, and A. Schreier. 2022. Environmental DNA methods for ecological monitoring and biodiversity assessment in estuaries. Estuaries and Coasts 45:2254-2273. (url)

Farrell, C.J., B. M. Johnson, A. G. Hansen, C. A. Myrick, E. C. Anderson, T. A. Delomas, A. D. Schreier, and J. P. Van

Eenennaam. 2022. Cytological and molecular approaches for ploidy determination: results from a wild Walleye population. North American Journal of Fisheries Management 42:849-856. (url)

Finger AJ, Benjamin A, Crookshanks C., Campbell MA and Saglam IK. 2022. Broad- and fine-scale structure across the 

distribution of the Relict Dace (Relictus solitarius) in the Great Basin Desert, USA. Conservation Science and Practice. e12672. https://doi.org/10.1111/csp2.12672

Karim, N., L-W. Lin, J. P. Van Eenennaam, N. A. Fangue, A. D. Schreier, M. A. Phillips, and R. H. Rice. Epidermal cell cultures

from white and green sturgeon (Acipenser transmontanus and medirostris): expression of TGM1-like transglutaminases and CYP4501A. PLoS One 17(3):e0265218. (url)

Mauduit, F., A. Segarra, M. Mandic, A. Todgham, M. Baerwald, A. Schreier, N. Fangue, and R. Connon. Understanding risks

and consequences of pathogen infections on the physiological performance of outmigrating Chinook Salmon. Conservation Physiology 10(1):coab102. (url)

Gille, D.A., B. T. Barney, A. Segarra, M. R. Baerwald, A. D. Schreier, and R. E. Connon. 2022. Investigation of molecular

pathogen screening assays for use in delta smelt. San Francisco Estuary and Watershed Science 20(1):4. (url)

Campbell MA, Featured in the SHOAL New Species Report: https://shoalconservation.org/new-species-2022-report-released/

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2021​

Delomas, T. A., S. C. Willis, B. Parker, D. Miller, P. Anders, A. Schreier, S. Narum. Genotyping SNPs and inferring ploidy by

amplicon sequencing for polyploid, ploidy variable species. Molecular Ecology Resources 21(7):2288-1298. (pdf)

Saglam, I. K., Hobbs, J., Baxter, R., Lewis, L., Benjamin, A.*, and Finger, A. J. (2021) Genomic study of longfin smelt

(Spirinchus thaleichthys) in the northeastern Pacific reveals regional patterns of genetic drift, structure, and gene flow. Canadian Journal of Fisheries and Aquatic Sciences. (pdf)

Kieran S. R.*, Hull, J., Finger, A. J. (2021) Environmental DNA sampling provides new management strategies for vernal pool

branchiopods in California. PLoS One (pdf)

Coen, A.*, M. Fish, R. Lovell, J. Rodzen, R. Schwartz, and A. Schreier. 2021. High levels of genetic divergence detected in

Sacramento Perch (Archoplites interruptus) suggest two divergent translocation sources. Transactions of the American Fisheries Society 150(3):375-387. (pdf)

Schreier, A. D., J. P. Van Eenennaam, P. Anders, S. Young, and J. Crossman. 2021. Spontaneous autopolyploidy in the

Acipenseriformes, with recommendations for management. Reviews in Fish Biology and Fisheries 31:159-180. (pdf)

Leal, M.J., J. P. Van Eenennaam, A. D. Schreier, and A. E. Todgham. 2021. Reduced growth may be linked to lower aerobic

scope in juvenile triploid white sturgeon (Acipenser transmontanus). Aquaculture 534:736157 (pdf)

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2020

Kieran S. K.*, Hull, J. and Finger, A. J. (2020) Using environmental DNA to monitor the spatial distribution of the California

Tiger Salamander Ambystoma californiense. Journal of Wildlife Management. (pdf)

Baerwald, M. R., A. M. Goobla, R. P. Nagarajan, J. S. Gootenberg, O. O. Abudayyeh, F. Zheng, and A. D. Schreier. Rapid and

accurate species identification for ecological studies and monitoring using CRISPR-based SHERLOCK. Molecular Ecology Resources 20:961-970.

Mahardja, B., A. Goodman, A. Goodbla, A. D. Schreier, C. Johnston, D. Contreras, L. McMartin, and R. C. Fuller. 2020.

Introduction of Bluefin Killifish Lucania goodei into the Sacramento-San Joaquin Delta. Journal of Fish and Wildlife Management 18(2): Article 3. (pdf)

Sanches*, T. M. and A. D. Schreier. 2020. Optimizing an environmental DNA protocol for monitoring threatened Chinook

Salmon in the San Francisco Estuary: balancing sensitivity, cost and time. PLoS ONE 15(5): e0233522.

Leal, M. J., J. P. Van Eenennaam, A. D. Schreier, and A. E. Todgham. (2020) Diploid and triploid white sturgeon (Acipenser

transmontanus) differ in magnitude but not kinetics of physiological responses to exhaustive exercise at ambient and elevated temperatures. Canadian Journal of Fisheries and Aquatic Sciences  77:666-673. (pdf)

Nagarajan, R. P., A. Goodbla, E. Graves, M. Baerwald, M. Holyoak, and A. Schreier. (2020) Non-invasive genetic monitoring

for the threatened valley elderberry longhorn beetle. PLoS ONE 15(1):e0227333.

Schreier, A. D. and P. Stevens. (2020) Further evidence of lower Columbia River green sturgeon spawning. Environmental

Biology of Fishes 103(2):201-208. (pdf)

Van Eenennaam, J. P., A. Fiske*, M. J. Leal, C. Cooley-Rieders, A. E. Todgham, F. S. Conte, and A. D. Schreier. (2020)

Mechanical shock during egg de-adhesion and post-ovulatory ageing contribute to spontaneous autopolyploidy in white sturgeon culture (Acipenser transmontanus). Aquaculture 515:734530 (open access)

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2019

Struch, R.*, E. Pulster, A. Schreier, and S. Murawski. (2019) Hepatobiliary analyses suggest chronic PAH exposure in hakes

(Urophycis spp.) following the Deepwater Horizon oil spill. Environmental Toxicology and Chemistry 38(12):2740-2749. (pdf)

Thorstensen, M.*, P. Bates, K. Lepla, and A. Schreier. (2019) To breed or not to breed? Maintaining genetic diversity in white

sturgeon supplementation programs. Conservation Genetics 20:997-1007. (pdf)

Fiske, A.*, J. Van Eenennaam, A. Todgham, S. Young, C. Holem-Bell, A. Goodbla, A. Schreier. (2019) A comparison of

methods for determining ploidy in white sturgeon (Acipenser transmontanus). Aquaculture 507:435-442. (pdf)

Leal, M. J., J. P. Van Eenennaam, A. D. Schreier, A. E. Todgham. (2019) Triploidy in white sturgeon (Acipenser transmontanus):

effects of acute stress and warm acclimation on physiological performance. Comparative Biochemistry and Physiology A: Molecular and Integrative Physiology 229:10-17. (pdf)

Mahardja, B., Hobbs, J.A., Ikemiyagi, N., Healey, B., Benjamin, A., and Finger, A.J. (2019) Role of freshwater floodplain-tidal

slough complex in the persistence of the endangered delta smelt. PLoS ONE 14(1): e0208084. (pdf) 

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